Welcome to STARS1’s documentation!
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Installation
Package installation from github
Download data from zenodo
Introduction
What does the tissue look like?
What does raw data look like?
Load data
Accessing cached data
Subsetting data
Visualizing cached data
Clustering workflow
Normalize data - normalizing by the median of transcripts per cell
Scale data
Run PCA
Run UMAP - This is taking about 15 minutes for the whole data set
Find Neighbors
Clustering
Visualizing cells
cell counts
Indices and tables
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Index
Module Index
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STARS1
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Installation
Introduction
Load data
Accessing cached data
Subsetting data
Visualizing cached data
Clustering workflow
Visualizing cells
Related Topics
Documentation overview
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